Oral presentation, poster and workshop





1.           Chen, W. C., Lai, J. G., Jang, T. H., Huang, C. L. and Yuh, C. H., “WNK1, the downstream effector of VEGF-PI3K/Akt pathway on angiogenesis/vasculogenesis in Zebrafish”, JOINT MEETING OF The 6th Korea-Japan Joint Symposium on Vascular Biology and The 16th Annual Meeting of the Japanese Vascular Biology and Medicine Organization- New Dimensions in Vascular Biology and Medicine", (invited speaker) KANAZAWA JAPAN, December 3 -5, 2008,

2.           Chan, T. M., Longabaugh, W., Bolouri, H., Chen, H. L., Tseng, W. F., Chao, C. H., Jang, T. H., Lin, Y. I., Hung, S. C., Wang H. D. and Yuh, C. H., “Developmental Gene Regulatory Networks in the Zebrafish Embryo”, 2008 Women in Marine Science & Biotechnology Academic Conference and Career Development, (invited speaker) Taipei, Taiwan, October 27 - 28, 2008.

3.           Tsai, T, F., Lin, P. T., Tsai, S. F., Shieh S. R. G. and Yuh, C. H. “Pathway analysis for gene expression profile in the Hepatitis B Virus X protein induced Hepatocellular Carcinoma mouse model” 9th International Conference on Systems Biology workshop 3: Inferring network for disease (invited speaker), Gothenburg, Sweden, August 27-28, 2008.

4.           Chan, T. M., Wang H. D. and Yuh, C. H. “The Endoderm Gene Regulatory Networks: Subcircuits of Sox32 and Sox17 in Zebrafish Development”, 9th International Conference on Systems Biology (poster), Gothenburg, Sweden, August 23- 27, 2008.

5.           Chan, T. M., Longabaugh  W., Bolouri  H., and Yuh, C. H. “Developmental gene regulatory networks (GRNs) of the zebrafish embryo”, Gene Networks in Animal Development and Evolution Colloquia (poster), February 14~16, 2008

6.           Chan, T. M., Chen, H. L., Tseng, W. F., Chao, C. H., Jang, T. H., Lin, Y. I., Hsu, H. I., Huang, C. B. and Yuh, C. H., “The Transcriptional Regulatory Networks of the Zebrafish Endoderm”, Symposium of Bioinformatics and Systems Biology in Taiwan (invited speaker), September 4~5, 2007

7.           Chan, T. M., Chen, H. L., Tseng, W. F., Chao, C. H., Jang, T. H., Lin, Y. I., Hsu, H. I., Huang, C. B. and Yuh, C. H., “Systematically decipher the genomic regulatory networks for early embryogenesis in Zebrafish”,  The Sixth across the Taiwan Strait Symposium on Cell Biology (invited speaker), May 19~21, 2007

8.           Yuh, C. H. , “Developmental gene regulatory networks (GRNs) of zebrafish embryo” 2006 Bioinformatics in Taiwan (invited speaker), September 12~15, 2006

9.           Chan, T. M., Jang, T. H., Wang, H. D., and Yuh, C. H. “Mapping Embryonic Gene Regulatory Network in Zebrafish”. The 21st Joint Annual Conference of Biomedical Science. (Selected oral presentation) Taipei, March 19, 2006

10.       Chan, T. M., Jang, T. H., Wang, H. D. and Yuh, C. H. “Mapping Mesendoderm Gene Regulatory Network in Zebrafish”, Keystone Symposia on Systems Biology: Integrating Biology, Technology and Computation (poster), Taos, New Mexico, USA, March 5-10, 2006

11.       Jang, T. H., Lin, Y. I., Chen, H. L., Tseng, W. F., Chan, T. M., Davidson, E. H. and Yuh, C. H. “Systematic Approach to Transcriptional Regulation: Establish the Gene Regulatory Network for Endoderm Differentiation in Sea Urchin, Zebrafish and Colorectal Cancer”, Taiwan-India joint symposium on functional genomics, (invited speaker) India, New Delhi., October 20-21,2005

12.       Yuh, C. H. “Systematic approach toward the transcription regulation: Networks building to understand the development and disease formation”, 21st Biology Summer Camp (invited speaker), Chia-i, Taiwan, August 24-26, 2005

13.       Yuh, C. H.  “Brn1/2/4, the Predict Midgut Regulator of the Endo16 Gene of the Sea Urchin Embryo”. 4th NHRI Conference on Developmental Biology (invited speaker), April 29-30, 2005.

14.       Yuh, C. H.  Develop a High-throughput way to identify the inter-relationship between regulatory modules, and the completeness of the endomesoderm Gene Regulatory Network in the sea urchin embryo. Kenting winter workshop for the molecular biology (invited speaker), January 26-28, 2005.

15.       Yuh, C. H. and Davidson, E. H. “The inter-relationship of the inputs of krox, GATA(e) and Otx on the regulation of Otxb1/2 transcripts” (Poster presentation) Systems Biology: Genomic Approaches to Transcriptional Regulation, Cold Spring Harbor, USA, Sponsored by Caltech., March 4- March 7, 2004

16.       Yuh, C. H. and Davidson, E. H. “Identify the negative elements, regulate the Endo16 promoter and develop a useful tool for identifying the unknown negative module in the sea urchin genome”. (Poster presentation) Systems Biology: Genomic Approaches to Transcriptional Regulation, Cold Spring Harbor, USA Sponsored by Caltech, March 4- March 7, 2004

17.       Yuh, C. H. and Davidson, E. H. “Understanding Otx gene regulation by comparative methods” (Oral) Developmental Biology of the sea urchin XV, Woods Hole MA, September 24 to September 29, 2003.

18.       Yuh, C. H. and Davidson, E. H. “A genomic regulatory network for development 1. Mapping the functional elements in the Otx endodermal specific modules and the interrelationship of the inputs of Krox, GATA (e) and Otx 2. Identify the negative elements regulate the Endo16 promoter and developing a useful tool for identified the unknown negative modules.” (invited speaker) Institute for Systems Biology and Fred Hutchinson Cancer Research Center, Seattle WA, June 13, 2003.

19.       Yuh, C. H. and Davidson, E. H. “Systemamatic study of transcriptional regulation in the endo-mesoderm gene network” (Oral) Developmental Biology of the sea urchin XIV, Woods Hole MA, May 1 to May 5, 2002.

20.       Yuh C. H. (Customer Training) Procise-cLC Customer training class, Applied Biosystem, Foster city, June 26-29, 2001.

21.      Yuh, C. H., Hamid Bolouri and Davidson, E. H. “Cis-regulatory logic in the Endo16 gene: switching from a specification to a differentiation mode of control.” (Poster) 40th Annual Meeting of the American Society for Cell Biology, December 9 to December 13, 2000.

22.       Yuh, C. H. and Davidson, E. H. " 1. Developmental transfer of control within the Endo16 Cis-regulatory system: experimental extension of the computational model; 2. Multiple roles of Otx transcription factor and Otx-interacting factors in the endoderm and ectoderm of sea urchin embryos " (Oral) Developmental Biology of the sea urchin XIII, September 28 to October 2, 2000.

23.       Yuh C. H. and Davidson, E. H. “Gene regulatory networks in sea urchin” (speaker).  Genetic Regulatory Networks in Embryogenesis and Evolution, A workshop sponsored by the Center for Advanced Studies in the Space Life Sciences at the MBL. June 11-14, 1998.

24.       Yuh, C. H. “Functional intermodular interrelation and dedicated Cis-regulatory elements within module A of Endo16 promoter” (Oral) Developmental Biology of the sea urchin XI, Marine Biology Laboratories, Woods Hole, MA, September 10-14, 1997.

25.       Yuh, C. H. and Davidson, E. H. " The interaction and output of the functional elements in the module A of Endo16 Promoter" (Oral). The Sixth Southwest Transcription Factor Meeting, Apr. 11-12, 1997.

26.       Yuh, C. H. and Davidson, E. H. "Quantitative investigation and Mutagenesis analysis of Endo16 Promoter" (Oral). The Fifth Southwest Transcription Factor Meeting, Nov. 15-16, 1996.

27.       Yuh, C. H. and Davidson, E. H. "Mutagenesis analysis of Endo16 Promoter" (Oral). The Sixth Biology Annual Retreat of Caltech, October 20-22, 1996.

28.       Yuh, C. H. and Davidson, E. H. "Modular Cis-Regulatory Organization of Endo16, a Gut-Specific Gene of the Sea Urchin Embryo” (Poster)”. The Research Directors Conference of Caltech, February 1, 1996.

29.       Yuh, C. H. and Davidson, E. H. "Complex Spatial and Temporal Transcriptional Regulation of an Endoderm-Specific Marker Gene in the Sea Urchin Embryo". (Oral) The Fifth Biology Annual Retreat of Caltech. October 20-22, 1995.

30.       Yuh, C. H. and Davidson, E. H. "Transcriptional Regulation of Endo16 in the Sea Urchin Embryo" (Oral). The Forth Southwest Transcription Factor Meeting, May 5-6, 1995.

31.       Yuh, C. H. and Ting, L. P. "Functional Organization of the HBV Second Enhancer: C/EBP-Like Proteins Binding to the Box-aand Box-b Elements and Cooperation of the two Elements Is Required for Its Function" (Oral). The Seventh Joint Annual Conference of Biomedical Sciences, March 21-22, 1992.

32.       Yuh, C. H. and Ting, L. P. "Dural Regulatory Roles of 106-bp Sequence on Gene Expression of Hepatitis B Virus" (Oral). The Sixth Joint Annual Conference of Biomedical Sciences, March 23-24, 1991.

33.       Yuh, C. H., Lee, S. C. and Ting, L. P. "Cooperation Between II-a and II-bRegions of the Human Hepatitis B Viral Second Enhancer" (Poster). The First Asian Conference on Transcription (ACT-I). December 6-8, 1990.

34.       Yuh, C. H., Chang, Y. L. and Ting, L. P. "Action Mechanism of the Second Enhancer of Human Hepatitis B Virus" (Oral). The Sixth Molecular Biology Retreat. September 6-8, 1990.

35.       Yuh, C. H. and Ting, L. P. "Identification of the Second Enhancer in the Human Hepatitis B Virus and Its Action Mechanism" (Oral). The Fifth Joint Annual Conference of Biomedical Sciences, April 7-8, 1990.

36.      Yuh, C. H. and Ting, L. P. "Human Hepatitis B Virus Contains Second Enhancer" (Oral). The Twenty Third Annual Meeting of the Chinese Society of Microbiology, December 10, 1989.